Info • Gloeophyllum trabeum v1.0

Status

This draft assembly was produced using Roche (454), Fosmid (Sanger) and Solexa (Illumina) data.

Summary statistics for the Gloeophyllum trabeum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.18
Sequencing read coverage depth 54
# of contigs 2289
# of scaffolds 443
# of scaffolds >= 2Kbp 443
Scaffold N50 7
Scaffold L50 (Mbp) 1.86
# of gaps 923
% of scaffold length in gaps 7.4%
Three largest Scaffolds (Mbp) 4.29, 3.40, 3.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 16712 13265 79.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1803 1500
transcript 1426 1191
exon 232 146
intron 75 57
description:
protein length (aa) 421 347
exons per gene 6.14 5
# of gene models 11846


Collaborators

  • PI: Igor Grigoriev - DOE Joint Genome Institute
  • Adrian Tsang - Concordia University Centre for Structural and Functional Genomics
  • Dan Cullen - USDA and University of Wisconsin

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.