Info • Gilbertella persicaria var. persicaria CBS 190.32-T v1.0

Status

[January 2017] The Gilbertella persicaria CBS 190.32 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gilbertella persicaria var. persicaria CBS 190.32-T v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.73
Sequencing read coverage depth 214x
# of contigs 125
# of scaffolds 125
# of scaffolds >= 2Kbp 121
Scaffold N50 23
Scaffold L50 (Mbp) 0.43
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.78, 0.76, 0.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50896 47011 92.4%
Ests est.fasta 116575362 113827402 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1510 1263
transcript 1343 1109
exon 333 195
intron 57 50
description:
protein length (aa) 397 318
exons per gene 4.03 3
# of gene models 10992


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.