Info • Fusarium redolens MPI-CAGE-AT-0023 v1.0

Status

[July 2017] The Fusarium redolens MPI-CAGE-AT-0023 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium redolens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.56
Sequencing read coverage depth 105.67x
# of contigs 74
# of scaffolds 74
# of scaffolds >= 2Kbp 74
Scaffold N50 9
Scaffold L50 (Mbp) 1.97
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.05, 3.96, 3.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44330 42214 95.2%
Ests est.fasta 152524731 151431933 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1695 1453
transcript 1539 1323
exon 527 322
intron 83 56
description:
protein length (aa) 462 385
exons per gene 2.92 2
# of gene models 17051


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.