Info • Fomes fomentarius CIRM-BRFM 1821 v1.0

Status

[July 2017] The Fomes fomentarius CIRM-BRFM 1821 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fomes fomentarius CIRM-BRFM 1821 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.95
Sequencing read coverage depth 142.91x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 6
Scaffold L50 (Mbp) 3.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.92, 4.29, 3.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 92039 90533 98.4%
Ests est.fasta 125549549 124190336 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1798 1567
transcript 1436 1230
exon 242 147
intron 75 61
description:
protein length (aa) 417 346
exons per gene 5.93 5
# of gene models 14757


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.