Cunninghamella echinulata NRRL 1382 v1.0
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Status

[January 2017] The Cunninghamella echinulata NRRL 1382 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cunninghamella echinulata NRRL 1382 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.00
Sequencing read coverage depth 140x
# of contigs 2669
# of scaffolds 2567
# of scaffolds >= 2Kbp 2010
Scaffold N50 424
Scaffold L50 (Mbp) 0.02
# of gaps 102
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.10, 0.09, 0.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 24173 21714 89.8%
Ests est.fasta 118388451 114201259 96.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1866 1560
transcript 1415 1160
exon 303 174
intron 125 113
description:
protein length (aa) 426 339
exons per gene 4.66 4
# of gene models 10443


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.