Status
[May 2015] The Corollospora maritima CBS 119819 genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).
Summary statistics for the Corollospora maritima CBS
119819 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.97 |
| Sequencing read coverage depth | 144.8x |
| # of contigs | 983 |
| # of scaffolds | 866 |
| # of scaffolds >= 2Kbp | 688 |
| Scaffold N50 | 95 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 117 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.66, 0.41, 0.37 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 36482 | 33908 | 92.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1664 | 1398 |
| transcript | 1504 | 1241 |
| exon | 582 | 376 |
| intron | 103 | 77 |
| description: | ||
| protein length (aa) | 416 | 326 |
| exons per gene | 2.58 | 2 |
| # of gene models | 12991 |
Collaborators
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
