Coccomyxa sp. C-169
On September 25, 2017 our website will be switching from HTTP to HTTPS (Secure Protocol). If you use the Download API please add the "-L" parameter to your curl commands. Sorry for the inconvenience.

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly:

Assembled scaffolds (unmasked): Coccomyxa_C169_v2_genomic_scaffolds.fasta.gz

Assembled scaffolds (masked): Coccomyxa_C169_v2_masked_genomic_scaffolds.fasta.gz

Assembled scaffolds (organellar): Coccomyxa_C169_v2_organellar_scaffolds.fasta.gz

Annotation:

"Filtered Models" is the filtered set of models representing the best gene model for each locus. "All Models" represents all models generated for this genome which may include redundant model sets for each locus.

Filtered Models ("best")

Proteins: Coccomyxa_C169_v2_filtered_proteins.fasta.gz

Transcripts: Coccomyxa_C169_v2_filtered_transcripts.fasta.gz

Genes: Coccomyxa_C169_v2_filtered_genes.gff.gz

Functional Annotations

GO annotations: Coccomyxa_C169_v2_filtered_proteins_GO.tab.gz

KOG annotations: Coccomyxa_C169_v2_filtered_proteins_KOG.tab.gz

KEGG annotation: Coccomyxa_C169_v2_filtered_proteins_KEGG.tab.gz

InterPro domains: Coccomyxa_C169_v2_filtered_proteins_IPR.tab.gz

SIGNALP annotations: Coccomyxa_C169_filtered_proteins_SIGNALP.tab.gz

All Models, Filtered and Not

Proteins: Coccomyxa_C169_v2_all_proteins.fasta.gz

Transcripts: Coccomyxa_C169_v2_all_transcripts.fasta.gz

ESTs:

Clustered ESTs: Coccomyxa_C169_v2_EST_cluster_consensi.fasta.gz

ESTs: Coccomyxa_C169_v2_ESTs.fasta.gz