Status
[Mar 2015] The Clonostachys rosea CBS125111 genome was sequenced using Illumina and assembled using AllPathsLG. (Gnerre et al. 2010)
Summary statistics for the Clonostachys rosea CBS125111
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.44 |
| Sequencing read coverage depth | 59 |
| # of contigs | 774 |
| # of scaffolds | 74 |
| # of scaffolds >= 2Kbp | 69 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 2.07 |
| # of gaps | 700 |
| % of scaffold length in gaps | 1.7% |
| Three largest Scaffolds (Mbp) | 4.39, 4.03, 3.86 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 32917 | 32445 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1752 | 1530 |
| transcript | 1599 | 1398 |
| exon | 565 | 354 |
| intron | 86 | 65 |
| description: | ||
| protein length (aa) | 465 | 393 |
| exons per gene | 2.83 | 2 |
| # of gene models | 18639 |
Collaborators
Kathryn Bushley, University of Minnesota
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
