Circinella umbellata NRRL1351 v1.0


[January 2017] The Circinella umbellata NRRL1351 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Circinella umbellata NRRL1351 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.27
Sequencing read coverage depth 123.92x
# of contigs 313
# of scaffolds 313
# of scaffolds >= 2Kbp 294
Scaffold N50 27
Scaffold L50 (Mbp) 0.69
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.96, 1.52, 1.35

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42296 38917 92.0%
Ests est.fasta 180319643 178802071 99.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1764 1501
transcript 1337 1104
exon 287 171
intron 119 98
protein length (aa) 385 306
exons per gene 4.66 4
# of gene models 14693


Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.