Info • Bombardia bombarda SMH3391-2 v1.0

Status

[July 2017] The Bombardia bombarda SMH3391-2 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Bombardia bombarda SMH3391-2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.60
Sequencing read coverage depth 191.79x
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 2
Scaffold L50 (Mbp) 9.88
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 10.14, 9.88, 3.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38544 38133 98.9%
Ests est.fasta 104953155 104864262 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1771 1524
transcript 1560 1324
exon 544 328
intron 115 75
description:
protein length (aa) 462 379
exons per gene 2.87 2
# of gene models 12102


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.