Info • Baudoinia compniacensis UAMH 10762 (4089826) v1.0

Status

Version 1.0 (June 2011). This draft genome assembly of Baudoinia compniacensis was sequenced using Roche (454), Sanger fosmids and shredded consensus from velvet assembled Illumina data.

Summary statistics for the Baudoinia compniacensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.88
Sequencing read coverage depth 43.53
# of contigs 35
# of scaffolds 19
# of scaffolds >= 2Kbp 19
Scaffold N50 7
Scaffold L50 (Mbp) 1.30
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.03, 2.03, 1.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_clusters 28083 26894 95.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1548 1323
transcript 1460 1236
exon 681 415
intron 79 60
description:
protein length (aa) 417 338
exons per gene 2.14 2
# of gene models 10513


Collaborators

Igor Grigoriev, DOE-JGI
James Scott, University of Toronto, Canada

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.