Aspergillus wentii v1.0

Status

The Aspergillus wentii DTO 134E9 genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Aspergillus wentii DTO 134E9 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 31.35
Sequencing read coverage depth 95
# of contigs 118
# of scaffolds 27
# of scaffolds >= 2Kbp 21
Scaffold N50 4
Scaffold L50 (Mbp) 4.13
# of gaps 91
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 5.07, 5.03, 4.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 39518 38005 96.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1715 1466
transcript 1554 1326
exon 496 293
intron 77 58
description:
protein length (aa) 463 383
exons per gene 3.13 3
# of gene models 12442


Collaborators

Ronald de Vries, CBS Fungal Biodiversity Centre, Institute of the Royal Netherlands Academy of Arts and Sciences

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.