Aspergillus tubingensis v1.0

Status

The Aspergillus tubingensis CBS 134.48 genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Aspergillus tubingensis CBS 134.48 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 35.15
Sequencing read coverage depth 125.7
# of contigs 87
# of scaffolds 33
# of scaffolds >= 2Kbp 30
Scaffold N50 5
Scaffold L50 (Mbp) 2.95
# of gaps 54
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.80, 4.32, 3.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
RNAseq assemblies RNAseq assemblies 51541 47257 91.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1769 1494
transcript 1580 1338
exon 495 284
intron 89 63
description:
protein length (aa) 475 396
exons per gene 3.19 3
# of gene models 12322


Collaborators

Ronald de Vries, CBS Fungal Biodiversity Centre, Institute of the Royal Netherlands Academy of Arts and Sciences

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.